Yeah. All samples in Protracker are bumped down to 8363hz. You can either record your own stuff at 8363hz and play it at C-5 in the tracker, or record your samples at 16726hz and play the samples at C-6 for a little more clarity.
Protracker just hasn't got a C-6. Protracker just got 3 octaves, in FT2 they map from C-3 to B-5 afair.
@Eagle:
There still is a fine tune value in PT, but it only ranges from -8 to 7 and the corresponding sample rates in hz are:
7895,7941,7985,8046,8107,8169,8232,8280, 8363,8413,8463,8529,8581,8651,8723,8757.